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With Deepskystacker or similar programs it's easy to add calibration frames which are applied to the final output image after stacking all your subs, however I would like to apply them to each sub to make a video with. Is there a program that can do this (or ideally is there an option in DeepSkyStacker to do this)?

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If anyone else ever has this issue I figured out DeepSkyStacker can do it. Go to Options->Settings->Intermediate Files and check

Create a calibrated file for each light frame
Save a debayered image when processing RAW images
Create a registered/calibrated file for each light frame

I'm unsure which of these options is the one that is needed (I just checked all of them), but if all are checked it will output calibrated subs.

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