New answers tagged plugin
I think ths is right-on with the suggestion of copying the MakerNotes with exiftool. To do this: exiftool -tagsfromfile rawfile.cr2 -makernotes output.jpg which should work. (I've tested it with Pentax RAW files but not with Canon.) Further, finding a plugin that includes the MakerNotes in the exported JPEGs should do the trick as well. Several people ...
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